##
##
## Kmer mean_count sd_count x_value y_value
## ------ ----------- --------- --------- ----------
## AGAGA 35.75 3.226127 69.49392 0.6605520
## ATGGG 27.10 2.074913 52.67931 0.5861656
## TAGAG 16.90 2.954034 32.85167 0.5728437
## AAGAG 33.10 4.191470 64.34263 0.5327362
## GAGAG 23.85 5.304169 46.36168 0.5307113
## `geom_line()`: Each group consists of only one observation.
## ℹ Do you need to adjust the group aesthetic?
##
##
## Kmer mean_count sd_count x_value y_value
## ------- ----------- --------- --------- ----------
## AGAGAG 9.6 2.603641 20.59360 0.7414784
## AAGAGA 14.4 2.663595 30.89041 0.7033911
## TAGAGA 6.4 2.062191 13.72907 0.6779956
## ATGGGG 5.5 1.701393 11.79842 0.6573817
## AGAGAT 8.8 1.321881 18.87747 0.5954735
## `geom_line()`: Each group consists of only one observation.
## ℹ Do you need to adjust the group aesthetic?
##
## ## Results for k = 5
## Kmers retained in the 500 first bases of all virus genomes:
## [1] "AAAAA" "AAAAG" "AAACC" "AAACG" "AAAGG" "AACAG" "AACCA" "AACCG" "AACGC" "AAGAG" "AAGCT" "AATAT" "ACAAG" "ACAGC" "ACAGT" "ACCAA" "ACGCG" "AGAAA" "AGAGA" "AGAGC" "AGATC" "AGATG"
## [23] "AGATT" "AGCAG" "AGTCT" "AGTTT" "ATATG" "ATCTC" "ATGAA" "ATGAT" "ATGCT" "ATGGC" "ATGGG" "ATTCC" "ATTCT" "CAACA" "CAACG" "CAATA" "CAGAT" "CAGCA" "CAGTT" "CATGA" "CCAAC" "CCGCG"
## [45] "CGACA" "CGGAA" "CTCTG" "CTGAA" "CTTTC" "GAAAA" "GAAAC" "GAAAG" "GACAA" "GACCA" "GAGAA" "GAGAG" "GAGAT" "GAGCA" "GATCT" "GATGG" "GATTC" "GCAGA" "GCAGG" "GCTGA" "GGAAA" "GGAAG"
## [67] "GGACC" "GGAGA" "GGCGA" "GGGGA" "GTGGA" "GTTAG" "GTTGT" "GTTTT" "TAGAG" "TAGTC" "TATGC" "TCAAC" "TCAAT" "TCTCT" "TCTGA" "TGAAA" "TGAAC" "TGCTG" "TGGAC" "TGGCG" "TGGGG" "TGTTA"
## [89] "TTAAC" "TTAGA" "TTAGT" "TTCAA" "TTCCA" "TTCTC" "TTGTT"
##
##
## Kmer mean_count sd_count x_value y_value
## ------ ----------- --------- --------- ----------
## AGAGA 35.75 3.226127 69.49392 0.6605520
## ATGGG 27.10 2.074913 52.67931 0.5861656
## TAGAG 16.90 2.954034 32.85167 0.5728437
## AAGAG 33.10 4.191470 64.34263 0.5327362
## GAGAG 23.85 5.304169 46.36168 0.5307113
##
## ## Results for k = 6
## Kmers retained in the 500 first bases of all virus genomes:
## [1] "AAAAAG" "AAACCG" "AAACGC" "AACAGC" "AACAGT" "AACCAA" "AACGCG" "AAGAGA" "AATATG" "ACAGCA" "ACAGTT" "ACCAAC" "AGAAAC" "AGAGAG" "AGAGAT" "AGAGCA" "AGATCT" "AGATGG" "AGATTC"
## [20] "AGCAGA" "AGCAGG" "ATATGC" "ATCTCT" "ATGCTG" "ATGGGG" "ATTCTC" "CAACAG" "CAATAT" "CAGATC" "CAGCAG" "CAGTTT" "CATGAT" "CCAACA" "CCAACG" "CGACAA" "CTGAAA" "GAAAAA" "GAAACC"
## [39] "GAAACG" "GACAAG" "GAGAAA" "GAGAGC" "GAGATT" "GAGCAG" "GATCTC" "GATGGG" "GATTCT" "GCAGAT" "GCTGAA" "GGAAAA" "GTGGAC" "GTTAGT" "GTTGTT" "TAGAGA" "TAGTCT" "TATGCT" "TCAATA"
## [58] "TCTCTG" "TGAAAC" "TGCTGA" "TGTTAG" "TTAGTC" "TTGTTA"
##
##
## Kmer mean_count sd_count x_value y_value
## ------- ----------- --------- --------- ----------
## AGAGAG 9.6 2.603641 20.59360 0.7414784
## AAGAGA 14.4 2.663595 30.89041 0.7033911
## TAGAGA 6.4 2.062191 13.72907 0.6779956
## ATGGGG 5.5 1.701393 11.79842 0.6573817
## AGAGAT 8.8 1.321881 18.87747 0.5954735